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Boston Protein Design and Modeling Club @UCyaktwdDGH1j1DVtNpFeRMg@youtube.com

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Boston Protein Design and Modeling Club (BPDMC) is a communi


59:56
De novo design of miniprotein-based natural killer cell engagers
01:12:44
Massively parallel discovery of peptides to inhibit cellular protein interactions
01:14:04
Small But Mighty: What an LSTM Network Reveals About Protein Design and About Machine Learning
01:05:21
Jointly Embedding Protein Structures and Sequences through Residue Level Alignment
01:00:13
Discrete diffusion models for generative protein design
01:12:58
Review and discussion of AlphaFold3
01:21:22
Recent methods for protein structure generation and design
01:18:23
Designer proteins for stem cell engineering
46:39
Shedding light on functional dark matter with genomic language modeling
58:58
Computational Design of non-porous, pH-responsive antibody nanoparticles
01:26:30
Unsupervised early warning of viral antibody escape to design & test variant-proof therapeutics
01:28:45
Bridging Biophysics and AI to Optimize Protein Design
01:03:00
Learning transferable protein backmapping from conformational ensembles
01:36:23
DiffDock: Diffusion Steps, Twists and Turns for Molecular Docking and Beyond!
01:11:19
Computational design of autoinhibitory domains for a protease-activated PD-L1 antagonist
01:05:57
Exploring structural heterogeneity through cryoEM, cryoET, and deep learning
01:14:43
Investigating the volume &diversity of data needed for generalizable antibody-antigen ∆∆G prediction
01:16:42
Exploration of novel functional sequence space using evolution-informed design
59:18
Understanding & discovering fold-switching proteins by combining AlphaFold2 & sequence clustering
01:19:48
Fragment-based backbone sampling & neural net derived potentials to design protein-binding peptides
01:05:28
Building a global data supply chain to improve protein design and protect biodiversity
01:17:45
Expanding the Universe of Functional Proteins by Computational Design
01:30:36
Protein sequence design by explicit energy landscape optimization
01:18:23
Designing ligand-binding proteins from scratch
01:00:01
De novo design of mini-proteins to inhibit bacterial biofilm formation
01:03:00
Tertiary motifs as building blocks for the design of protein binding peptides
52:16
A computational approach to design structured peptides and predict peptide behavior in solution
27:16
Designing cKIT Receptor Inhibitors to Clear Hematopoietic Stem Cells Prior to Bone Marrow Transplant
01:17:30
Initial reaction to AlphaFold2 right after CASP14
01:01:04
The 7 Habits of Highly Successful Protein Therapeutics
01:02:51
Massively Parallel Protein Design to Develop Enzymes for Next-Generation Chemotherapy
01:18:03
New tools for studying the mechanics of single proteins
01:09:30
Why designs fail, and how they move
01:10:06
De novo Glycan Modeling and Design
43:15
A view of the structure-fitness landscape from an unsupervised vantage
51:20
Rational de novo design of disulfide-rich miniprotein agonists and antagonists for family B GPCRs
01:07:37
From large to small, protein design for stability and de novo interfaces
01:18:46
Therapeutic enzyme engineering using a generative neural network
58:51
Learning from natural antibodies for sequence generation and fast structure prediction
02:04:03
ColabDesign - Tutorial on using structure prediction methods for protein design
01:05:03
How local changes in secondary structure flexibility can drive protein function
01:12:12
Learning to design mini-proteins that bind to specific protein targets
01:33:06
Predicting protein structures from single sequences
01:46:09
ColabFold - Making protein folding accessible to all via Google Colab!